diff --git a/.gitignore b/.gitignore
index f81569d..aa20a16 100644
--- a/.gitignore
+++ b/.gitignore
@@ -107,7 +107,7 @@ experiments/*
 
 # DO Include
 !batdetect2_notebook.ipynb
-!batdetect2/models/checkpoints/*.pth.tar
+!src/batdetect2/models/checkpoints/*.pth.tar
 !tests/data/*.wav
 !notebooks/*.ipynb
 !tests/data/**/*.wav
diff --git a/batdetect2/__init__.py b/src/batdetect2/__init__.py
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rename from batdetect2/__init__.py
rename to src/batdetect2/__init__.py
diff --git a/batdetect2/api.py b/src/batdetect2/api.py
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rename from batdetect2/api.py
rename to src/batdetect2/api.py
diff --git a/batdetect2/cli/__init__.py b/src/batdetect2/cli/__init__.py
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rename from batdetect2/cli/__init__.py
rename to src/batdetect2/cli/__init__.py
diff --git a/batdetect2/cli/ascii.py b/src/batdetect2/cli/ascii.py
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rename from batdetect2/cli/ascii.py
rename to src/batdetect2/cli/ascii.py
diff --git a/batdetect2/cli/base.py b/src/batdetect2/cli/base.py
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rename from batdetect2/cli/base.py
rename to src/batdetect2/cli/base.py
diff --git a/batdetect2/cli/compat.py b/src/batdetect2/cli/compat.py
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rename from batdetect2/cli/compat.py
rename to src/batdetect2/cli/compat.py
diff --git a/batdetect2/cli/data.py b/src/batdetect2/cli/data.py
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rename from batdetect2/cli/data.py
rename to src/batdetect2/cli/data.py
diff --git a/batdetect2/cli/preprocess.py b/src/batdetect2/cli/preprocess.py
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rename from batdetect2/cli/preprocess.py
rename to src/batdetect2/cli/preprocess.py
diff --git a/batdetect2/cli/train.py b/src/batdetect2/cli/train.py
similarity index 100%
rename from batdetect2/cli/train.py
rename to src/batdetect2/cli/train.py
diff --git a/batdetect2/compat/__init__.py b/src/batdetect2/compat/__init__.py
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rename from batdetect2/compat/__init__.py
rename to src/batdetect2/compat/__init__.py
diff --git a/batdetect2/compat/data.py b/src/batdetect2/compat/data.py
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rename from batdetect2/compat/data.py
rename to src/batdetect2/compat/data.py
diff --git a/batdetect2/compat/params.py b/src/batdetect2/compat/params.py
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rename from batdetect2/compat/params.py
rename to src/batdetect2/compat/params.py
diff --git a/batdetect2/configs.py b/src/batdetect2/configs.py
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rename from batdetect2/configs.py
rename to src/batdetect2/configs.py
diff --git a/batdetect2/data/__init__.py b/src/batdetect2/data/__init__.py
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rename from batdetect2/data/__init__.py
rename to src/batdetect2/data/__init__.py
diff --git a/batdetect2/data/annotations/__init__.py b/src/batdetect2/data/annotations/__init__.py
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rename from batdetect2/data/annotations/__init__.py
rename to src/batdetect2/data/annotations/__init__.py
diff --git a/batdetect2/data/annotations/aoef.py b/src/batdetect2/data/annotations/aoef.py
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rename from batdetect2/data/annotations/aoef.py
rename to src/batdetect2/data/annotations/aoef.py
diff --git a/batdetect2/data/annotations/batdetect2.py b/src/batdetect2/data/annotations/batdetect2.py
similarity index 100%
rename from batdetect2/data/annotations/batdetect2.py
rename to src/batdetect2/data/annotations/batdetect2.py
diff --git a/batdetect2/data/annotations/legacy.py b/src/batdetect2/data/annotations/legacy.py
similarity index 100%
rename from batdetect2/data/annotations/legacy.py
rename to src/batdetect2/data/annotations/legacy.py
diff --git a/batdetect2/data/annotations/types.py b/src/batdetect2/data/annotations/types.py
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rename from batdetect2/data/annotations/types.py
rename to src/batdetect2/data/annotations/types.py
diff --git a/batdetect2/data/datasets.py b/src/batdetect2/data/datasets.py
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rename from batdetect2/data/datasets.py
rename to src/batdetect2/data/datasets.py
diff --git a/batdetect2/data/iterators.py b/src/batdetect2/data/iterators.py
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rename from batdetect2/data/iterators.py
rename to src/batdetect2/data/iterators.py
diff --git a/batdetect2/detector/__init__.py b/src/batdetect2/detector/__init__.py
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rename from batdetect2/detector/__init__.py
rename to src/batdetect2/detector/__init__.py
diff --git a/batdetect2/detector/compute_features.py b/src/batdetect2/detector/compute_features.py
similarity index 100%
rename from batdetect2/detector/compute_features.py
rename to src/batdetect2/detector/compute_features.py
diff --git a/batdetect2/detector/model_helpers.py b/src/batdetect2/detector/model_helpers.py
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rename from batdetect2/detector/model_helpers.py
rename to src/batdetect2/detector/model_helpers.py
diff --git a/batdetect2/detector/models.py b/src/batdetect2/detector/models.py
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rename from batdetect2/detector/models.py
rename to src/batdetect2/detector/models.py
diff --git a/batdetect2/detector/parameters.py b/src/batdetect2/detector/parameters.py
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rename from batdetect2/detector/parameters.py
rename to src/batdetect2/detector/parameters.py
diff --git a/batdetect2/detector/post_process.py b/src/batdetect2/detector/post_process.py
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rename from batdetect2/detector/post_process.py
rename to src/batdetect2/detector/post_process.py
diff --git a/batdetect2/evaluate/__init__.py b/src/batdetect2/evaluate/__init__.py
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rename from batdetect2/evaluate/__init__.py
rename to src/batdetect2/evaluate/__init__.py
diff --git a/batdetect2/evaluate/evaluate.py b/src/batdetect2/evaluate/evaluate.py
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rename from batdetect2/evaluate/evaluate.py
rename to src/batdetect2/evaluate/evaluate.py
diff --git a/batdetect2/evaluate/legacy/evaluate_models.py b/src/batdetect2/evaluate/legacy/evaluate_models.py
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rename from batdetect2/evaluate/legacy/evaluate_models.py
rename to src/batdetect2/evaluate/legacy/evaluate_models.py
diff --git a/batdetect2/evaluate/legacy/readme.md b/src/batdetect2/evaluate/legacy/readme.md
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rename from batdetect2/evaluate/legacy/readme.md
rename to src/batdetect2/evaluate/legacy/readme.md
diff --git a/batdetect2/evaluate/match.py b/src/batdetect2/evaluate/match.py
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rename from batdetect2/evaluate/match.py
rename to src/batdetect2/evaluate/match.py
diff --git a/batdetect2/evaluate/metrics.py b/src/batdetect2/evaluate/metrics.py
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rename from batdetect2/evaluate/metrics.py
rename to src/batdetect2/evaluate/metrics.py
diff --git a/batdetect2/evaluate/types.py b/src/batdetect2/evaluate/types.py
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rename from batdetect2/evaluate/types.py
rename to src/batdetect2/evaluate/types.py
diff --git a/batdetect2/finetune/__init__.py b/src/batdetect2/finetune/__init__.py
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rename from batdetect2/finetune/__init__.py
rename to src/batdetect2/finetune/__init__.py
diff --git a/batdetect2/finetune/finetune_model.py b/src/batdetect2/finetune/finetune_model.py
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rename from batdetect2/finetune/finetune_model.py
rename to src/batdetect2/finetune/finetune_model.py
diff --git a/batdetect2/finetune/prep_data_finetune.py b/src/batdetect2/finetune/prep_data_finetune.py
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rename from batdetect2/finetune/prep_data_finetune.py
rename to src/batdetect2/finetune/prep_data_finetune.py
diff --git a/batdetect2/finetune/readme.md b/src/batdetect2/finetune/readme.md
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rename from batdetect2/finetune/readme.md
rename to src/batdetect2/finetune/readme.md
diff --git a/batdetect2/models/__init__.py b/src/batdetect2/models/__init__.py
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rename from batdetect2/models/__init__.py
rename to src/batdetect2/models/__init__.py
diff --git a/batdetect2/models/backbones.py b/src/batdetect2/models/backbones.py
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rename from batdetect2/models/backbones.py
rename to src/batdetect2/models/backbones.py
diff --git a/batdetect2/models/blocks.py b/src/batdetect2/models/blocks.py
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rename from batdetect2/models/blocks.py
rename to src/batdetect2/models/blocks.py
diff --git a/batdetect2/models/bottleneck.py b/src/batdetect2/models/bottleneck.py
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rename from batdetect2/models/bottleneck.py
rename to src/batdetect2/models/bottleneck.py
diff --git a/batdetect2/models/checkpoints/Net2DFast_UK_same.pth.tar b/src/batdetect2/models/checkpoints/Net2DFast_UK_same.pth.tar
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rename from batdetect2/models/checkpoints/Net2DFast_UK_same.pth.tar
rename to src/batdetect2/models/checkpoints/Net2DFast_UK_same.pth.tar
diff --git a/batdetect2/models/checkpoints/readme.md b/src/batdetect2/models/checkpoints/readme.md
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rename from batdetect2/models/checkpoints/readme.md
rename to src/batdetect2/models/checkpoints/readme.md
diff --git a/batdetect2/models/decoder.py b/src/batdetect2/models/decoder.py
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diff --git a/batdetect2/models/detectors.py b/src/batdetect2/models/detectors.py
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rename to src/batdetect2/models/detectors.py
diff --git a/batdetect2/models/encoder.py b/src/batdetect2/models/encoder.py
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rename from batdetect2/models/encoder.py
rename to src/batdetect2/models/encoder.py
diff --git a/batdetect2/models/heads.py b/src/batdetect2/models/heads.py
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rename from batdetect2/models/heads.py
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diff --git a/batdetect2/models/types.py b/src/batdetect2/models/types.py
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diff --git a/batdetect2/plot.py b/src/batdetect2/plot.py
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diff --git a/batdetect2/plotting/__init__.py b/src/batdetect2/plotting/__init__.py
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diff --git a/batdetect2/plotting/common.py b/src/batdetect2/plotting/common.py
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rename from batdetect2/plotting/common.py
rename to src/batdetect2/plotting/common.py
diff --git a/batdetect2/plotting/heatmaps.py b/src/batdetect2/plotting/heatmaps.py
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rename from batdetect2/plotting/heatmaps.py
rename to src/batdetect2/plotting/heatmaps.py
diff --git a/batdetect2/postprocess/__init__.py b/src/batdetect2/postprocess/__init__.py
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diff --git a/batdetect2/postprocess/decoding.py b/src/batdetect2/postprocess/decoding.py
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rename from batdetect2/postprocess/decoding.py
rename to src/batdetect2/postprocess/decoding.py
diff --git a/batdetect2/postprocess/detection.py b/src/batdetect2/postprocess/detection.py
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rename from batdetect2/postprocess/detection.py
rename to src/batdetect2/postprocess/detection.py
diff --git a/batdetect2/postprocess/extraction.py b/src/batdetect2/postprocess/extraction.py
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rename from batdetect2/postprocess/extraction.py
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diff --git a/batdetect2/postprocess/nms.py b/src/batdetect2/postprocess/nms.py
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diff --git a/batdetect2/postprocess/remapping.py b/src/batdetect2/postprocess/remapping.py
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diff --git a/batdetect2/postprocess/types.py b/src/batdetect2/postprocess/types.py
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diff --git a/batdetect2/preprocess/__init__.py b/src/batdetect2/preprocess/__init__.py
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diff --git a/batdetect2/preprocess/audio.py b/src/batdetect2/preprocess/audio.py
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rename from batdetect2/preprocess/audio.py
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diff --git a/batdetect2/preprocess/spectrogram.py b/src/batdetect2/preprocess/spectrogram.py
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diff --git a/batdetect2/preprocess/types.py b/src/batdetect2/preprocess/types.py
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diff --git a/batdetect2/targets/__init__.py b/src/batdetect2/targets/__init__.py
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diff --git a/batdetect2/targets/classes.py b/src/batdetect2/targets/classes.py
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diff --git a/batdetect2/targets/filtering.py b/src/batdetect2/targets/filtering.py
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diff --git a/batdetect2/targets/rois.py b/src/batdetect2/targets/rois.py
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diff --git a/batdetect2/targets/terms.py b/src/batdetect2/targets/terms.py
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diff --git a/batdetect2/targets/transform.py b/src/batdetect2/targets/transform.py
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diff --git a/batdetect2/targets/types.py b/src/batdetect2/targets/types.py
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diff --git a/batdetect2/train/__init__.py b/src/batdetect2/train/__init__.py
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diff --git a/batdetect2/train/augmentations.py b/src/batdetect2/train/augmentations.py
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diff --git a/batdetect2/train/callbacks.py b/src/batdetect2/train/callbacks.py
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diff --git a/batdetect2/train/clips.py b/src/batdetect2/train/clips.py
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diff --git a/batdetect2/train/config.py b/src/batdetect2/train/config.py
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diff --git a/batdetect2/train/dataset.py b/src/batdetect2/train/dataset.py
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diff --git a/batdetect2/train/labels.py b/src/batdetect2/train/labels.py
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rename from batdetect2/train/labels.py
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diff --git a/batdetect2/train/legacy/readme.md b/src/batdetect2/train/legacy/readme.md
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diff --git a/batdetect2/train/legacy/train.py b/src/batdetect2/train/legacy/train.py
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diff --git a/batdetect2/train/legacy/train_model.py b/src/batdetect2/train/legacy/train_model.py
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diff --git a/batdetect2/train/legacy/train_split.py b/src/batdetect2/train/legacy/train_split.py
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diff --git a/batdetect2/train/legacy/train_utils.py b/src/batdetect2/train/legacy/train_utils.py
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diff --git a/batdetect2/train/lightning.py b/src/batdetect2/train/lightning.py
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diff --git a/batdetect2/train/losses.py b/src/batdetect2/train/losses.py
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diff --git a/batdetect2/train/preprocess.py b/src/batdetect2/train/preprocess.py
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diff --git a/batdetect2/train/types.py b/src/batdetect2/train/types.py
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diff --git a/batdetect2/types.py b/src/batdetect2/types.py
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diff --git a/batdetect2/utils/__init__.py b/src/batdetect2/utils/__init__.py
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diff --git a/batdetect2/utils/audio_utils.py b/src/batdetect2/utils/audio_utils.py
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diff --git a/batdetect2/utils/detector_utils.py b/src/batdetect2/utils/detector_utils.py
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diff --git a/batdetect2/utils/plot_utils.py b/src/batdetect2/utils/plot_utils.py
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diff --git a/batdetect2/utils/visualize.py b/src/batdetect2/utils/visualize.py
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diff --git a/batdetect2/utils/wavfile.py b/src/batdetect2/utils/wavfile.py
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