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conda-dependencies-fix

dev

feat/GH-7-filename-in-console-output

feat/add-chunk-size-to-cli

feat/migrate-to-numpy-2

feat/migrate-to-uv

fix/GH-10-merge-results-index-error

fix/GH-15-spectrogram-features-computation

fix/GH-30-torch-deprecation-warning-weights-only

fix/GH-31-negative-dimension-are-not-allowed

fix/GH-5-time-expansion-is-not-read

fix/handle-empty-files-gracefully

fix/update-dependencies

fix/update-python-version-support

issue-20

main

no_preprocessing

remove_xarray

test/add_audio_files_provided_by_padpadpadpad_to_test_suite

train

#11

#12

#16

#2

#21

#25

#32

#33

#34

#35

#36

#37

#38

#39

#4

#44

#45

#52

#6

#8

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v1.0.4

v1.0.5

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• 39b328031d Update the file count assert in test_list_audio_files() Mike Evans 2023-10-10 08:14:56 +0100
• e368b47aa8 Add zero size file for testing. issue-20 Mike Evans 2023-10-09 14:08:14 +0100
• 9b04049fbe Potential fix for issuu#20 Mike Evans 2023-10-09 11:27:02 +0100
• 14aefafe14
  Update README.md Oisin Mac Aodha 2023-08-25 10:36:59 +0100
• 1cef6e37e0
  Update README.md Oisin Mac Aodha 2023-08-25 10:35:23 +0100
• 9baf60ff2d Bump version: 1.0.5 → 1.0.6 v1.0.6 Santiago Martinez 2023-08-03 12:42:52 +0100
• 70877495d4
  Merge pull request #16 from macaodha/fix/GH-15-spectrogram-features-computation Oisin Mac Aodha 2023-08-03 12:36:19 +0100
• 3288f52bbd tests: added tests for feature computation fix/GH-15-spectrogram-features-computation Santiago Martinez 2023-08-03 11:45:39 +0100
• 8e8779a72e fix: call interval kwargs name error Santiago Martinez 2023-08-02 20:07:56 +0100
• 36d616530a tests: Added test for using the spec_feature flag Santiago Martinez 2023-08-02 20:00:56 +0100
• 14d001a71c
  Merge pull request #12 from arky/minor-fixes Oisin Mac Aodha 2023-06-28 13:48:10 +0100
• a54d197fdf Minor typos fixed Arky 2023-06-16 20:02:05 +0700
• cca883a730 Bump version: 1.0.4 → 1.0.5 v1.0.5 Santiago Martinez 2023-05-11 14:06:58 +0100
• e5370e98db
  Merge pull request #11 from macaodha/fix/GH-10-merge-results-index-error Santiago Martinez Balvanera 2023-05-11 14:05:57 +0100
• 04af74228b fix: the case of no detections is now handled better fix/GH-10-merge-results-index-error Santiago Martinez 2023-05-11 13:59:20 +0100
• 10d090cc14 Bump version: 1.0.3 → 1.0.4 v1.0.4 Santiago Martinez 2023-05-01 18:04:25 +0100
• 69c087bc20
  Merge pull request #8 from macaodha/feat/GH-7-filename-in-console-output Santiago Martinez Balvanera 2023-05-01 18:02:41 +0100
• 327f741aa2 feat: added filename to console output in cli feat/GH-7-filename-in-console-output Santiago Martinez 2023-05-01 17:51:18 +0100
• 2ddd2c022e Bump version: 1.0.2 → 1.0.3 v1.0.3 Santiago Martinez 2023-05-01 15:18:09 +0100
• 740ec6c359 Bump version: 1.0.2 → 1.0.3 fix/GH-5-time-expansion-is-not-read Santiago Martinez 2023-05-01 15:17:22 +0100
• 3d7ffae02a
  Merge pull request #6 from macaodha/fix/GH-5-time-expansion-is-not-read Santiago Martinez Balvanera 2023-05-01 15:12:50 +0100
• b71cb8c755 fix: CLI now reads time_expansion_factor correctly Santiago Martinez 2023-05-01 15:04:29 +0100
• 54d83219f1 Bump version: 1.0.1 → 1.0.2 v1.0.2 Santiago Martinez 2023-04-29 15:43:53 +0100
• 28dc435351 fix: added bump2version config to gitignore Santiago Martinez 2023-04-29 15:43:39 +0100
• 715db9a110 fix: move spectrogram to cpu when plotting Santiago Martinez 2023-04-29 15:39:45 +0100
• 616a24347d fix: Updated torch version to avoid security issue Santiago Martinez 2023-04-29 15:33:40 +0100
• 57f2b50239 fix: move tensors to cpu when converting to numpy Santiago Martinez 2023-04-29 15:30:25 +0100
• 68d3842931 v1.0.1 v1.0.1 Santiago Martinez 2023-04-13 08:29:22 -0600
• f4e0c6013e Fix: In pyproject.toml, project scripts reference to bat_detect updated. Santiago Martinez 2023-04-13 08:23:29 -0600
• b252f23093 WIP Santiago Martinez 2023-04-13 07:58:01 -0600
• 1417fce44f
  Create python-publish.yml v1.0 Santiago Martinez Balvanera 2023-04-13 07:55:51 -0600
• c865b53c17 fixed missing get_default_db_config function Santiago Martinez 2023-04-07 16:26:01 -0600
• 178fa518c3 update gitignore to include models Santiago Martinez 2023-04-07 15:50:44 -0600
• e8fd4e2931 version 1.0 Santiago Martinez 2023-04-07 15:47:16 -0600
• c2c9652a04 Finetune gradio app Santiago Martinez 2023-04-07 15:46:28 -0600
• 0f97d51086 freq axis ticks Santiago Martinez 2023-04-07 15:46:18 -0600
• 85092e846b Better frequency axis tick values Santiago Martinez 2023-04-07 15:46:04 -0600
• 0a7ad18193 Updated gradio app to new api Santiago Martinez 2023-04-07 15:20:27 -0600
• b8bbfe8ad4 updated extract spec slices bit Santiago Martinez 2023-04-07 15:20:15 -0600
• 5e08607eec Updated notebook Santiago Martinez 2023-04-07 14:46:54 -0600
• 638b5c578e Added plot module Santiago Martinez 2023-04-07 14:46:48 -0600
• 0a22f1798e Checked that returned features is a 2d numpy array Santiago Martinez 2023-04-07 14:46:38 -0600
• 29074c689e Add warning to finetuning modules Santiago Martinez 2023-04-07 11:27:09 -0600
• 9e79849d6f Changed bat_detect to batdetect2 Santiago Martinez 2023-04-07 11:24:22 -0600
• 7c80441d60
  Merge pull request #4 from macaodha/dev Oisin Mac Aodha 2023-04-07 15:06:10 +0100
• 80792f22d1
  Create python-package.yml Santiago Martinez Balvanera 2023-03-30 12:04:05 -0600
• b94a7760d3 Merge branch 'main' into dev dev Santiago Martinez 2023-03-30 12:01:56 -0600
• 22a2c70661 Minor README formatting Santiago Martinez 2023-03-30 11:58:14 -0600
• 148611bac0 Minor README formatting Santiago Martinez 2023-03-30 11:55:41 -0600
• 2d8d175f3f Updated README with new installation instructions and API Santiago Martinez 2023-03-30 11:52:42 -0600
• b0c3dbe403 Added documentation to the API module Santiago Martinez 2023-03-30 11:24:13 -0600
• cb650c265b Pyright config Santiago Martinez 2023-03-30 11:24:05 -0600
• 5b73b65b1a Added pytest to dev dependencies Santiago Martinez 2023-03-30 10:44:52 -0600
• 3c6600afcb fixed librosa core.spectrum import Santiago Martinez 2023-03-20 11:22:29 +0000
• ad1c345751 updated run_batdetect script Santiago Martinez 2023-03-20 11:14:14 +0000
• 0aa3d9d1e0 added model file Santiago Martinez 2023-03-20 11:11:05 +0000
• 74e8283576 update run_batdetect command Santiago Martinez 2023-03-20 11:09:41 +0000
• a4f99dd26a Merge branch 'main' into dev Santiago Martinez 2023-02-27 09:50:37 +0000
• ed21b47f61 update packaging file with new CLI Santiago Martinez 2023-02-26 21:10:44 +0000
• e900ddc86d git ignore all notebook related files except batdetect2_notebook Santiago Martinez 2023-02-26 21:10:35 +0000
• acf01f4970 Added postprocess function to API Santiago Martinez 2023-02-26 20:48:52 +0000
• b0d9576a24 Changed public API to use trained model by default Santiago Martinez 2023-02-26 19:17:47 +0000
• a2deab9f3f Added click to dependencies and made cli tests Santiago Martinez 2023-02-26 18:40:35 +0000
• 6f2bb605d3 Moved types to a single module Santiago Martinez 2023-02-26 14:27:03 +0000
• f0b0f28379 Changed the model API so that they always return the features Santiago Martinez 2023-02-25 20:10:44 +0000
• 0eecf54a94 Added an API file with tests to check basic functionality Santiago Martinez 2023-02-25 19:40:54 +0000
• e14da23004
  Merge pull request #2 from macaodha/conda-dependencies-fix Oisin Mac Aodha 2023-02-23 12:14:47 +0000
• 40222d8233 Fixed errors with command Santiago Martinez 2023-02-22 23:20:51 +0000
• e6a6ad4696 Finished refactoring detector_utils Santiago Martinez 2023-02-22 22:45:26 +0000
• 8da98b5258 Refactored detector_utils module Santiago Martinez 2023-02-22 20:24:43 +0000
• 7550c6faf1 updated .git-blame-ignore-revs file Santiago Martinez 2023-02-22 15:06:40 +0000
• 53100f51e0 formatted with black and isort Santiago Martinez 2023-02-22 15:06:02 +0000
• eaecf7ba45 change black line-length settings to 80 Santiago Martinez 2023-02-22 15:01:13 +0000
• ca2a9c39a0 adding typing and documentation to load_device function Santiago Martinez 2023-02-22 15:00:38 +0000
• d7ddf72c73 Made explicit imports in detector/models.py Santiago Martinez 2023-02-22 14:55:08 +0000
• 251d87c690 Added __init__.py files to evaluate and finetune modules Santiago Martinez 2023-02-22 14:49:48 +0000
• 894993dbd5 updated gitignore Santiago Martinez 2023-02-22 14:43:18 +0000
• 8f7020f72c updated README conda installation instructions conda-dependencies-fix Santiago Martinez 2023-02-21 09:22:50 +0000
• 0320d4c57f added a conda environment file to ease conda installation Santiago Martinez 2023-02-21 09:20:57 +0000
• c520c469d9 moved model directory into bat_detect module Santiago Martinez 2023-02-02 19:24:29 +0000
• fda330e8fd update blame ignore rev file Santiago Martinez 2023-02-02 19:13:39 +0000
• 9cb6b20949 formatted with black and isort Santiago Martinez 2023-02-02 19:13:00 +0000
• bf8230b2f7 updated gitignore Santiago Martinez 2023-02-02 19:10:19 +0000
• 9fd3412d5b Added command module Santiago Martinez 2023-02-02 19:06:24 +0000
• 7050f858aa Merge branch 'main' into dev Santiago Martinez 2023-02-01 13:02:57 +0000
• 24cea6d76e added pyproject file Santiago Martinez 2023-02-01 12:54:03 +0000
• 7f2580bb93
  Update LICENSE.md Oisin Mac Aodha 2023-02-01 11:57:45 +0000
• 4d6bf5e9e3 Added formatting commit to ignoreRevs file Santiago Martinez 2023-01-25 19:19:28 +0000
• 3c17a23371 Formatted code with Black and isort Santiago Martinez 2023-01-25 19:17:38 +0000
• 2dc385a700 update readme Oisin Mac Aodha 2022-12-20 17:08:27 +0000
• 441e2b6cce rename outputs in app Oisin Mac Aodha 2022-12-20 16:53:57 +0000
• 9959356750 limiting file length in demos Oisin Mac Aodha 2022-12-20 16:25:43 +0000
• 7b158d6e8d small clean up of app Oisin Mac Aodha 2022-12-19 22:47:35 +0000
• 20b710118b added gradio app Oisin Mac Aodha 2022-12-19 22:43:04 +0000
• 0d6eb7a248
  added biorxiv url Oisin Mac Aodha 2022-12-17 07:46:05 +0000
• 32afcdbd5d
  Added TODOs Oisin Mac Aodha 2022-12-14 23:10:05 +0000
• b4ab59511e tweaks macaodha 2022-12-14 19:08:05 +0000
• a5c263093f clean up instructions macaodha 2022-12-14 18:55:54 +0000
• 7b5b2be08f added viz scripts macaodha 2022-12-14 18:19:52 +0000
• 20218e023c Minor fixes to readme and updated requirements. macaodha 2022-12-13 17:56:45 +0000