"""Test the command line interface.""" from pathlib import Path import pandas as pd from click.testing import CliRunner from batdetect2.cli import cli def test_cli_base_command(): """Test the base command.""" runner = CliRunner() result = runner.invoke(cli, ["--help"]) assert result.exit_code == 0 assert ( "BatDetect2 - Bat Call Detection and Classification" in result.output ) def test_cli_detect_command_help(): """Test the detect command help.""" runner = CliRunner() result = runner.invoke(cli, ["detect", "--help"]) assert result.exit_code == 0 assert "Detect bat calls in files in AUDIO_DIR" in result.output def test_cli_detect_command_on_test_audio(tmp_path): """Test the detect command on test audio.""" results_dir = tmp_path / "results" # Remove results dir if it exists if results_dir.exists(): results_dir.rmdir() runner = CliRunner() result = runner.invoke( cli, [ "detect", "example_data/audio", str(results_dir), "0.3", ], ) assert result.exit_code == 0 assert results_dir.exists() assert len(list(results_dir.glob("*.csv"))) == 3 assert len(list(results_dir.glob("*.json"))) == 3 def test_cli_detect_command_with_non_trivial_time_expansion(tmp_path): """Test the detect command with a non-trivial time expansion factor.""" results_dir = tmp_path / "results" # Remove results dir if it exists if results_dir.exists(): results_dir.rmdir() runner = CliRunner() result = runner.invoke( cli, [ "detect", "example_data/audio", str(results_dir), "0.3", "--time_expansion_factor", "10", ], ) assert result.exit_code == 0 assert "Time Expansion Factor: 10" in result.stdout def test_cli_detect_command_with_the_spec_feature_flag(tmp_path: Path): """Test the detect command with the spec feature flag.""" results_dir = tmp_path / "results" # Remove results dir if it exists if results_dir.exists(): results_dir.rmdir() runner = CliRunner() result = runner.invoke( cli, [ "detect", "example_data/audio", str(results_dir), "0.3", "--spec_features", ], ) assert result.exit_code == 0 assert results_dir.exists() csv_files = [path.name for path in results_dir.glob("*.csv")] expected_files = [ "20170701_213954-MYOMYS-LR_0_0.5.wav_spec_features.csv", "20180530_213516-EPTSER-LR_0_0.5.wav_spec_features.csv", "20180627_215323-RHIFER-LR_0_0.5.wav_spec_features.csv", ] for expected_file in expected_files: assert expected_file in csv_files df = pd.read_csv(results_dir / expected_file) assert not (df.duration == -1).any()