move to src layout

2026-01-10 17:19:34 +01:00 · 2025-06-21 13:48:40 +01:00 · 2025-06-21 13:48:40 +01:00 · 960558be8b
commit 960558be8b
parent e352dc40bd
98 changed files with 1 additions and 1 deletions
--- a/.gitignore
+++ b/.gitignore
@ -107,7 +107,7 @@ experiments/*

 # DO Include
 !batdetect2_notebook.ipynb
-!batdetect2/models/checkpoints/*.pth.tar
+!src/batdetect2/models/checkpoints/*.pth.tar
 !tests/data/*.wav
 !notebooks/*.ipynb
 !tests/data/**/*.wav
--- a/src/batdetect2/init.py
+++ b/src/batdetect2/init.py
--- a/src/batdetect2/api.py
+++ b/src/batdetect2/api.py
--- a/src/batdetect2/cli/init.py
+++ b/src/batdetect2/cli/init.py
--- a/src/batdetect2/cli/ascii.py
+++ b/src/batdetect2/cli/ascii.py
--- a/src/batdetect2/cli/base.py
+++ b/src/batdetect2/cli/base.py
--- a/src/batdetect2/cli/compat.py
+++ b/src/batdetect2/cli/compat.py
--- a/src/batdetect2/cli/data.py
+++ b/src/batdetect2/cli/data.py
--- a/src/batdetect2/cli/preprocess.py
+++ b/src/batdetect2/cli/preprocess.py
--- a/src/batdetect2/cli/train.py
+++ b/src/batdetect2/cli/train.py
--- a/src/batdetect2/compat/init.py
+++ b/src/batdetect2/compat/init.py
--- a/src/batdetect2/compat/data.py
+++ b/src/batdetect2/compat/data.py
--- a/src/batdetect2/compat/params.py
+++ b/src/batdetect2/compat/params.py
--- a/src/batdetect2/configs.py
+++ b/src/batdetect2/configs.py
--- a/src/batdetect2/data/init.py
+++ b/src/batdetect2/data/init.py
--- a/src/batdetect2/data/annotations/init.py
+++ b/src/batdetect2/data/annotations/init.py
--- a/src/batdetect2/data/annotations/aoef.py
+++ b/src/batdetect2/data/annotations/aoef.py
--- a/src/batdetect2/data/annotations/batdetect2.py
+++ b/src/batdetect2/data/annotations/batdetect2.py
--- a/src/batdetect2/data/annotations/legacy.py
+++ b/src/batdetect2/data/annotations/legacy.py
--- a/src/batdetect2/data/annotations/types.py
+++ b/src/batdetect2/data/annotations/types.py
--- a/src/batdetect2/data/datasets.py
+++ b/src/batdetect2/data/datasets.py
--- a/src/batdetect2/data/iterators.py
+++ b/src/batdetect2/data/iterators.py
--- a/src/batdetect2/detector/init.py
+++ b/src/batdetect2/detector/init.py
--- a/src/batdetect2/detector/compute_features.py
+++ b/src/batdetect2/detector/compute_features.py
--- a/src/batdetect2/detector/model_helpers.py
+++ b/src/batdetect2/detector/model_helpers.py
--- a/src/batdetect2/detector/models.py
+++ b/src/batdetect2/detector/models.py
--- a/src/batdetect2/detector/parameters.py
+++ b/src/batdetect2/detector/parameters.py
--- a/src/batdetect2/detector/post_process.py
+++ b/src/batdetect2/detector/post_process.py
--- a/src/batdetect2/evaluate/init.py
+++ b/src/batdetect2/evaluate/init.py
--- a/src/batdetect2/evaluate/evaluate.py
+++ b/src/batdetect2/evaluate/evaluate.py
--- a/src/batdetect2/evaluate/legacy/evaluate_models.py
+++ b/src/batdetect2/evaluate/legacy/evaluate_models.py
--- a/src/batdetect2/evaluate/legacy/readme.md
+++ b/src/batdetect2/evaluate/legacy/readme.md
--- a/src/batdetect2/evaluate/match.py
+++ b/src/batdetect2/evaluate/match.py
--- a/src/batdetect2/evaluate/metrics.py
+++ b/src/batdetect2/evaluate/metrics.py
--- a/src/batdetect2/evaluate/types.py
+++ b/src/batdetect2/evaluate/types.py
--- a/src/batdetect2/finetune/init.py
+++ b/src/batdetect2/finetune/init.py
--- a/src/batdetect2/finetune/finetune_model.py
+++ b/src/batdetect2/finetune/finetune_model.py
--- a/src/batdetect2/finetune/prep_data_finetune.py
+++ b/src/batdetect2/finetune/prep_data_finetune.py
--- a/src/batdetect2/finetune/readme.md
+++ b/src/batdetect2/finetune/readme.md
--- a/src/batdetect2/models/init.py
+++ b/src/batdetect2/models/init.py
--- a/src/batdetect2/models/backbones.py
+++ b/src/batdetect2/models/backbones.py
--- a/src/batdetect2/models/blocks.py
+++ b/src/batdetect2/models/blocks.py
--- a/src/batdetect2/models/bottleneck.py
+++ b/src/batdetect2/models/bottleneck.py
--- a/src/batdetect2/models/checkpoints/Net2DFast_UK_same.pth.tar
+++ b/src/batdetect2/models/checkpoints/Net2DFast_UK_same.pth.tar
--- a/src/batdetect2/models/checkpoints/readme.md
+++ b/src/batdetect2/models/checkpoints/readme.md
--- a/src/batdetect2/models/decoder.py
+++ b/src/batdetect2/models/decoder.py
--- a/src/batdetect2/models/detectors.py
+++ b/src/batdetect2/models/detectors.py
--- a/src/batdetect2/models/encoder.py
+++ b/src/batdetect2/models/encoder.py
--- a/src/batdetect2/models/heads.py
+++ b/src/batdetect2/models/heads.py
--- a/src/batdetect2/models/types.py
+++ b/src/batdetect2/models/types.py
--- a/src/batdetect2/plot.py
+++ b/src/batdetect2/plot.py
--- a/src/batdetect2/plotting/init.py
+++ b/src/batdetect2/plotting/init.py
--- a/src/batdetect2/plotting/common.py
+++ b/src/batdetect2/plotting/common.py
--- a/src/batdetect2/plotting/heatmaps.py
+++ b/src/batdetect2/plotting/heatmaps.py
--- a/src/batdetect2/postprocess/init.py
+++ b/src/batdetect2/postprocess/init.py
--- a/src/batdetect2/postprocess/decoding.py
+++ b/src/batdetect2/postprocess/decoding.py
--- a/src/batdetect2/postprocess/detection.py
+++ b/src/batdetect2/postprocess/detection.py
--- a/src/batdetect2/postprocess/extraction.py
+++ b/src/batdetect2/postprocess/extraction.py
--- a/src/batdetect2/postprocess/nms.py
+++ b/src/batdetect2/postprocess/nms.py
--- a/src/batdetect2/postprocess/remapping.py
+++ b/src/batdetect2/postprocess/remapping.py
--- a/src/batdetect2/postprocess/types.py
+++ b/src/batdetect2/postprocess/types.py
--- a/src/batdetect2/preprocess/init.py
+++ b/src/batdetect2/preprocess/init.py
--- a/src/batdetect2/preprocess/audio.py
+++ b/src/batdetect2/preprocess/audio.py
--- a/src/batdetect2/preprocess/spectrogram.py
+++ b/src/batdetect2/preprocess/spectrogram.py
--- a/src/batdetect2/preprocess/types.py
+++ b/src/batdetect2/preprocess/types.py
--- a/src/batdetect2/targets/init.py
+++ b/src/batdetect2/targets/init.py
--- a/src/batdetect2/targets/classes.py
+++ b/src/batdetect2/targets/classes.py
--- a/src/batdetect2/targets/filtering.py
+++ b/src/batdetect2/targets/filtering.py
--- a/src/batdetect2/targets/rois.py
+++ b/src/batdetect2/targets/rois.py
--- a/src/batdetect2/targets/terms.py
+++ b/src/batdetect2/targets/terms.py
--- a/src/batdetect2/targets/transform.py
+++ b/src/batdetect2/targets/transform.py
--- a/src/batdetect2/targets/types.py
+++ b/src/batdetect2/targets/types.py
--- a/src/batdetect2/train/init.py
+++ b/src/batdetect2/train/init.py
--- a/src/batdetect2/train/augmentations.py
+++ b/src/batdetect2/train/augmentations.py
--- a/src/batdetect2/train/callbacks.py
+++ b/src/batdetect2/train/callbacks.py
--- a/src/batdetect2/train/clips.py
+++ b/src/batdetect2/train/clips.py
--- a/src/batdetect2/train/config.py
+++ b/src/batdetect2/train/config.py
--- a/src/batdetect2/train/dataset.py
+++ b/src/batdetect2/train/dataset.py
--- a/src/batdetect2/train/labels.py
+++ b/src/batdetect2/train/labels.py
--- a/src/batdetect2/train/legacy/readme.md
+++ b/src/batdetect2/train/legacy/readme.md
--- a/src/batdetect2/train/legacy/train.py
+++ b/src/batdetect2/train/legacy/train.py
--- a/src/batdetect2/train/legacy/train_model.py
+++ b/src/batdetect2/train/legacy/train_model.py
--- a/src/batdetect2/train/legacy/train_split.py
+++ b/src/batdetect2/train/legacy/train_split.py
--- a/src/batdetect2/train/legacy/train_utils.py
+++ b/src/batdetect2/train/legacy/train_utils.py
--- a/src/batdetect2/train/lightning.py
+++ b/src/batdetect2/train/lightning.py
--- a/src/batdetect2/train/losses.py
+++ b/src/batdetect2/train/losses.py
--- a/src/batdetect2/train/preprocess.py
+++ b/src/batdetect2/train/preprocess.py
--- a/src/batdetect2/train/train.py
+++ b/src/batdetect2/train/train.py
--- a/src/batdetect2/train/types.py
+++ b/src/batdetect2/train/types.py
--- a/src/batdetect2/types.py
+++ b/src/batdetect2/types.py
--- a/src/batdetect2/utils/init.py
+++ b/src/batdetect2/utils/init.py
--- a/src/batdetect2/utils/arrays.py
+++ b/src/batdetect2/utils/arrays.py
--- a/src/batdetect2/utils/audio_utils.py
+++ b/src/batdetect2/utils/audio_utils.py
--- a/src/batdetect2/utils/detector_utils.py
+++ b/src/batdetect2/utils/detector_utils.py
--- a/src/batdetect2/utils/plot_utils.py
+++ b/src/batdetect2/utils/plot_utils.py
--- a/src/batdetect2/utils/tensors.py
+++ b/src/batdetect2/utils/tensors.py
--- a/src/batdetect2/utils/visualize.py
+++ b/src/batdetect2/utils/visualize.py
--- a/src/batdetect2/utils/wavfile.py
+++ b/src/batdetect2/utils/wavfile.py