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conda-dependencies-fix

dev

feat/GH-7-filename-in-console-output

feat/add-chunk-size-to-cli

feat/loosen-dependencies

feat/migrate-to-numpy-2

feat/migrate-to-uv

fix/GH-10-merge-results-index-error

fix/GH-15-spectrogram-features-computation

fix/GH-30-torch-deprecation-warning-weights-only

fix/GH-31-negative-dimension-are-not-allowed

fix/GH-5-time-expansion-is-not-read

fix/handle-empty-files-gracefully

fix/update-dependencies

fix/update-python-version-support

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main

no_preprocessing

remove_xarray

test/add_audio_files_provided_by_padpadpadpad_to_test_suite

train

train-refactor

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#61

#65

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• 0adb1bbea7 docs: note beta install version pin main mbsantiago 2026-05-07 10:06:44 +0100
• ed46558462 fix: use PyPI token publish fallback v2.0.0b1 mbsantiago 2026-05-07 09:58:33 +0100
• 42a7162c81 Update version number mbsantiago 2026-05-07 09:39:02 +0100
• 6784815cd9
  Merge pull request #65 from macaodha/train Santiago Martinez Balvanera 2026-05-07 09:19:36 +0100
• 7cdb6221dc fix: Minor typo train mbsantiago 2026-05-07 09:16:51 +0100
• 48922b5910 fix: preserve CLI output defaults with outputs config mbsantiago 2026-05-07 09:15:55 +0100
• 0b410d9f4f Use all dev/optional dependencies in CI mbsantiago 2026-05-07 09:05:13 +0100
• 7b4101eba7 Merge remote-tracking branch 'origin/main' into train mbsantiago 2026-05-07 09:00:38 +0100
• f7d481271b chore: update beta release notes and silence noisy warnings mbsantiago 2026-05-07 08:42:18 +0100
• f909da5589 docs: expand python workflow tutorial mbsantiago 2026-05-07 08:36:46 +0100
• 7a0f5c4b5a docs: refresh evaluation tutorial outputs and setup mbsantiago 2026-05-07 08:24:08 +0100
• 5760b6e017 docs: expand training tutorial and config guidance mbsantiago 2026-05-07 07:54:46 +0100
• 214fbdb7cc docs: expand inference tutorial examples and model selection guidance mbsantiago 2026-05-07 07:09:49 +0100
• 94746b5f3b fix: defer model protocol type imports mbsantiago 2026-05-06 21:18:25 +0100
• cd962fefbd fix: preserve directory-relative output paths mbsantiago 2026-05-06 21:18:25 +0100
• 87d7cc7a03 docs: refresh FAQ and migration guidance mbsantiago 2026-05-06 21:18:25 +0100
• 2da6a9504c docs: remove obsolete legacy planning pages mbsantiago 2026-05-06 21:18:25 +0100
• fbb48c4d87 docs: polish docs entry points and metadata mbsantiago 2026-05-06 20:58:55 +0100
• df9f21b594 docs: expand legacy cli and api pages mbsantiago 2026-05-06 20:02:48 +0100
• ca0f0d92da docs: polish migration guide wording mbsantiago 2026-05-06 19:43:50 +0100
• ec4fa6c262 feat: support configurable batdetect2 class labels mbsantiago 2026-05-06 19:27:00 +0100
• d35866439b fix: normalize shared relative output paths mbsantiago 2026-05-06 19:11:55 +0100
• c4f759e9a3 feat: restore legacy batdetect2 process outputs mbsantiago 2026-05-06 18:57:52 +0100
• 105384d9a2 remove documentation plan mbsantiago 2026-05-06 17:45:27 +0100
• b0f85b96e3 fix: resolve remaining type check issues mbsantiago 2026-05-06 17:43:29 +0100
• ce6975770e ci: add GitHub workflows and release helpers mbsantiago 2026-05-06 17:22:18 +0100
• 69d8e2d228 docs: polish README overview and links mbsantiago 2026-05-06 16:50:45 +0100
• 855a79853b docs: refine CLI command docstrings mbsantiago 2026-05-06 14:47:29 +0100
• 6587c6c4e5 feat: rename CLI inference command to process mbsantiago 2026-05-06 14:32:51 +0100
• 831925bd95 feat: expose BatDetect2API at package root mbsantiago 2026-05-06 14:10:24 +0100
• b4efcfcf0f docs: refresh api reference guidance mbsantiago 2026-05-06 14:06:04 +0100
• 5cc5767eff fix: rename detector heads and refresh bundled checkpoint mbsantiago 2026-05-06 12:50:53 +0100
• 2008c8000f refactor: replace abstract model types with protocols mbsantiago 2026-05-06 12:50:32 +0100
• a27d1bbfd3 refactor: derive training config from the model mbsantiago 2026-05-06 12:48:40 +0100
• 999dc93d88 docs: improve API and CLI reference docs mbsantiago 2026-05-06 11:19:38 +0100
• 7c05fb8577 feat: default to bundled checkpoint mbsantiago 2026-05-06 10:33:04 +0100
• 31054f64f6 fix: load checkpoints on cpu mbsantiago 2026-05-05 21:49:09 +0100
• 84918086c8 feat: streamline bundled checkpoint handling mbsantiago 2026-05-05 21:34:54 +0100
• d83f801515 perf: defer heavy api imports mbsantiago 2026-05-05 16:39:43 +0100
• 5526ac99fc Remove stale dependencies mbsantiago 2026-05-05 16:20:37 +0100
• f5afa9881c feat: load checkpoints from Hugging Face mbsantiago 2026-05-05 15:46:39 +0100
• 5a974711b0 feat: log training provenance artifacts train-refactor mbsantiago 2026-05-05 14:09:53 +0100
• 7b2699786f feat: add checkpoint finetuning workflow mbsantiago 2026-05-05 12:16:37 +0100
• 75e52cc548 fix: keep checkpoint targets immutable mbsantiago 2026-05-05 10:59:32 +0100
• 7d416e0f99 Set model mode during training mbsantiago 2026-05-05 00:55:27 +0100
• 2d0b810ed3 Log scheduler and optimizer ocnfigs mbsantiago 2026-05-05 00:42:49 +0100
• 7a46fa021b Use base config for import config mbsantiago 2026-05-05 00:42:32 +0100
• cbe428fc3f Set default num workers to 0 mbsantiago 2026-05-04 23:15:51 +0100
• 7a10b7ffff refactor: remove aggregate app config mbsantiago 2026-05-04 23:10:31 +0100
• c27e7f9f52 fix: ensure checkpoint is path Santiago Martinez Balvanera 2026-05-04 22:56:34 +0100
• aa36df668f feat: persist target configs in checkpoints mbsantiago 2026-05-04 22:54:32 +0100
• 20a7c058fc feat: support target config roundtrips mbsantiago 2026-05-04 22:31:32 +0100
• eec126a502 fix: align cli and helpers with model refactor mbsantiago 2026-05-04 21:20:02 +0100
• 57236fc82a refactor: decouple model metadata from target configs mbsantiago 2026-05-04 21:18:17 +0100
• e33053614a update gitignore mbsantiago 2026-05-04 17:13:18 +0100
• ae4f742345 Modify max epochs with override before logging mbsantiago 2026-05-04 17:12:55 +0100
• 44f9870e9e fix: have 0 default workers for eval mbsantiago 2026-05-04 17:12:35 +0100
• d7e61ccd43 feat(plotting): add size heatmap label plotting mbsantiago 2026-05-04 16:48:49 +0100
• f82ec218f0 docs: clarify train base-dir option mbsantiago 2026-04-30 16:51:24 +0100
• 9da05c172c Merge branch 'train' into doc mbsantiago 2026-04-30 11:50:04 +0100
• a2f2a2d398 docs: add legacy workflow and migration guidance mbsantiago 2026-04-30 11:48:25 +0100
• 300716895e docs: add task guides and API/config references mbsantiago 2026-04-30 11:48:19 +0100
• 9dec35b1ce docs: expand core user workflow tutorials mbsantiago 2026-04-30 11:48:11 +0100
• 9635a858bd docs: align docs entry points with current workflows mbsantiago 2026-04-30 11:48:07 +0100
• f909e74c91 Fix: operators were inverted mbsantiago 2026-04-30 00:27:51 +0100
• a5fdf438e2 Minor fixes Santiago Martinez Balvanera 2026-04-24 16:21:47 +0100
• 4303d4e42d Fix logging imports mbsantiago 2026-04-23 19:26:45 +0100
• da113eaea8 Add path_in_list condition mbsantiago 2026-04-04 10:44:35 +0100
• 1579bbc6c5 Add csv list format mbsantiago 2026-04-04 10:23:14 +0100
• c67d9cbba0 Sort summary by class name mbsantiago 2026-04-03 17:13:12 +0100
• 00961132a9 Improve test suite for conditions mbsantiago 2026-04-03 17:07:26 +0100
• e04d86808d Add clip annotation filtering to data loading mbsantiago 2026-04-03 16:40:23 +0100
• c8dd4155bf Add conditions for clips and recordings mbsantiago 2026-04-03 16:40:11 +0100
• e80fe8675d Mark some tests as slow for quicker feedback mbsantiago 2026-03-29 15:55:24 +0100
• c24056214c Make sure api_v2 loads fast mbsantiago 2026-03-29 15:10:18 +0100
• 6d09133dca Minor fixes mbsantiago 2026-03-29 14:30:14 +0100
• 591d4f4ae8 Update docs on roi separation mbsantiago 2026-03-29 13:11:49 +0100
• 2b235e28bb Separate targets and ROI mbsantiago 2026-03-29 13:11:42 +0100
• 716b3a3778 Allow enabling/disabling filtering and transforms during data loading mbsantiago 2026-03-28 20:27:04 +0000
• 548cd366cd Add source filtering to dataset loading mbsantiago 2026-03-28 19:43:13 +0000
• 67bb66db3c Incorporate previous docs into new structure mbsantiago 2026-03-28 19:42:09 +0000
• d2d804f0c3 Create basic tutorial files, WIP mbsantiago 2026-03-28 19:05:34 +0000
• 42d6a0940c Add dev docs mbsantiago 2026-03-28 18:51:40 +0000
• 3074980e18 More extensive overview of cli reference mbsantiago 2026-03-28 18:51:34 +0000
• ebc1f573c8 Improved home doc page and moved faq to docs mbsantiago 2026-03-28 18:51:25 +0000
• c5b2446978 Add tests for detection threshold mbsantiago 2026-03-28 14:42:15 +0000
• 8e33473b4e Update docs with detection threshold mbsantiago 2026-03-28 14:26:51 +0000
• b253a54cc8 Use detection threshold use to API and CLI mbsantiago 2026-03-28 14:26:10 +0000
• dfe19c68f0 Add detection threshold override option to postprocessor mbsantiago 2026-03-28 14:25:18 +0000
• e4bbde9995 Better cli docs mbsantiago 2026-03-28 13:25:15 +0000
• 7277151f33 Start cli docs mbsantiago 2026-03-28 11:28:52 +0000
• 9ec2f1a107 Add audio dir to data cli command mbsantiago 2026-03-28 11:09:47 +0000
• 4ae567bc1d Bump version: 1.3.0 → 1.3.1 v1.3.1 mbsantiago 2026-03-25 13:57:34 +0000
• 04af8cdcea
  Merge pull request #61 from macaodha/feat/loosen-dependencies Santiago Martinez Balvanera 2026-03-25 13:53:39 +0000
• 13acd18050 Add correct index markers and newer setuptools feat/loosen-dependencies mbsantiago 2026-03-25 13:50:48 +0000
• 20295d0457 Add cu118 for python 3.9 mbsantiago 2026-03-25 13:42:09 +0000
• e602bb2495 Update lockfile mbsantiago 2026-03-25 13:36:01 +0000
• 853c8c6e67 Update classifier tags mbsantiago 2026-03-25 13:28:54 +0000
• 85667ca676 Add cu126 sources mbsantiago 2026-03-25 13:22:24 +0000
• 6bad018045 Change dev-dependencies to dependency-groups.dev mbsantiago 2026-03-25 12:52:08 +0000