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conda-dependencies-fix

dev

feat/GH-7-filename-in-console-output

feat/add-chunk-size-to-cli

feat/migrate-to-numpy-2

feat/migrate-to-uv

fix/GH-10-merge-results-index-error

fix/GH-15-spectrogram-features-computation

fix/GH-30-torch-deprecation-warning-weights-only

fix/GH-31-negative-dimension-are-not-allowed

fix/GH-5-time-expansion-is-not-read

fix/handle-empty-files-gracefully

fix/update-dependencies

fix/update-python-version-support

issue-20

main

test/add_audio_files_provided_by_padpadpadpad_to_test_suite

train

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#2

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#25

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#44

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#52

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• e8db1d4050 Fix hyperparameter saving train mbsantiago 2025-06-26 19:53:19 -0600
• b396d4908a Fix trainer init mbsantiago 2025-06-26 19:40:27 -0600
• ce15a0f152 Fix trainer init mbsantiago 2025-06-26 19:35:23 -0600
• 16febed792 Add test that ensures example_config is valid mbsantiago 2025-06-26 19:21:46 -0600
• d67ae9be05 Update config to remove optimiser level mbsantiago 2025-06-26 18:42:53 -0600
• 15de168a20 Update build trainer mbsantiago 2025-06-26 17:43:56 -0600
• 0c8fae4a72 Instantiate lightnign module from config mbsantiago 2025-06-26 17:39:50 -0600
• 6d57f96c07 update gitignore mbsantiago 2025-06-26 16:19:33 -0600
• a0622aa9a4 Fix train issues mbsantiago 2025-06-26 16:16:29 -0600
• 587742b41e Change train to use full config mbsantiago 2025-06-26 16:02:41 -0600
• 6d91153a56 use just instead of make mbsantiago 2025-06-26 13:29:23 -0600
• 70c96b6844 Move configs to example_data folder mbsantiago 2025-06-26 13:29:13 -0600
• 22f7d46f46 Improve logging of train preprocessing mbsantiago 2025-06-26 13:08:44 -0600
• 1384c549f7 Create TrainPreprocessConfig mbsantiago 2025-06-26 12:30:16 -0600
• 4b6acd5e6e Add manual logging of hyperparams mbsantiago 2025-06-26 11:59:33 -0600
• 2ac968d65b Test with dvc live mbsantiago 2025-06-26 10:05:01 -0600
• 166dad20bd Rename BlockGroupConfig to LayerGroupConfig mbsantiago 2025-06-26 10:04:42 -0600
• cbb02cf69e Add dvclive as an optional group mbsantiago 2025-06-26 10:04:16 -0600
• 647468123e Update model config in example config mbsantiago 2025-06-26 10:04:00 -0600
• 363eb9fb2f Add example-train to makefile mbsantiago 2025-06-26 10:03:52 -0600
• b21c224985 Add example preprocess to make file mbsantiago 2025-06-26 07:55:40 -0600
• 152a577511 Add comprehensive conf file mbsantiago 2025-06-26 07:55:33 -0600
• 136949c4e7 Add logging config mbsantiago 2025-06-26 07:55:24 -0600
• a462beaeb8 Remove rogue print mbsantiago 2025-06-24 06:27:41 -0600
• daab8ff0d7 Fix validation is_in_subclip after encoder changes mbsantiago 2025-06-24 06:26:08 -0600
• 235f0e27da Add load dataset config function mbsantiago 2025-06-24 12:40:29 +0100
• b5b4229990 Fix testing issues mbsantiago 2025-06-23 19:08:55 +0100
• 8253b5bdc4 Update makefile mbsantiago 2025-06-23 18:53:15 +0100
• c7ea361cf4 Implement changes needed to make roi encode/decode class dependent mbsantiago 2025-06-23 18:52:36 +0100
• 3407e1b5f0 Add other roi tests mbsantiago 2025-06-21 23:51:07 +0100
• 0a0d6f7162 Use standard dependency-groups instead of tool.uv section mbsantiago 2025-06-21 23:01:54 +0100
• ad0f0bcb24 Add tests for peak energy function mbsantiago 2025-06-21 23:01:08 +0100
• 3103630c26 Update pyproject to use src layout mbsantiago 2025-06-21 13:49:06 +0100
• 960558be8b move to src layout mbsantiago 2025-06-21 13:48:40 +0100
• e352dc40bd Fixed Target object after changes to roi mbsantiago 2025-06-21 13:47:04 +0100
• c559bcc682 Changed ROIMapper protocol to only have encoder/decoder methods mbsantiago 2025-06-21 11:44:15 +0100
• ebad489cb1 Merge branch 'train' of github.com:macaodha/batdetect2 into train mbsantiago 2025-06-20 16:03:15 +0100
• 3c9e5aca2f Fix testing issues mbsantiago 2025-06-20 15:57:11 +0100
• a62f07ebdd to cpu Santiago Martinez Balvanera 2025-06-19 00:46:43 +0100
• 434fc652a2 Add collate fn Santiago Martinez Balvanera 2025-06-19 00:46:34 +0100
• 84a13c65a7 Add iterators module mbsantiago 2025-06-19 00:28:24 +0100
• ebc89af4c6 Use soundevent.to_db mbsantiago 2025-06-19 00:28:01 +0100
• 4cd71497e7
  Merge pull request #52 from kaviecos/http_documentation main Santiago Martinez Balvanera 2025-06-03 23:38:45 +0100
• ba670932d5
  Update README.md Kavi Askholm Mellerup 2025-06-03 14:26:54 +0200
• d3747c57f2
  Update README.md Kavi Askholm Mellerup 2025-06-03 14:20:20 +0200
• 42a838e9f2 Bump version: 1.2.0 → 1.3.0 v1.3.0 mbsantiago 2025-05-16 15:02:15 +0100
• c10903a646
  Merge pull request #44 from kaviecos/http_support Santiago Martinez Balvanera 2025-05-16 15:01:08 +0100
• 4282e2ae70 Added AudioPath as an alias for the path definition Kavi 2025-05-16 15:13:08 +0200
• 52570738f2 Renamed load_audio_data to load_audio_and_samplerate Kavi 2025-05-16 14:56:35 +0200
• cbd362d6ea Updated docstrings for tests Kavi 2025-05-16 14:53:35 +0200
• 835fe1ccdf Remove old requirements files mbsantiago 2025-05-16 08:55:38 +0100
• b819180656 Add preprocess command to init mbsantiago 2025-05-01 07:15:35 +0100
• fdab0860fd Add num workers to cli mbsantiago 2025-04-30 23:40:26 +0100
• 3b5623ddca create train cli command mbsantiago 2025-04-30 23:27:38 +0100
• 2913fa59a4 Fix tests mbsantiago 2025-04-30 22:51:49 +0100
• 9c8b8fb200 Create metrics mbsantiago 2025-04-30 22:51:33 +0100
• bc86c94f8e Adding evaluation callback mbsantiago 2025-04-25 17:12:57 +0100
• 9106b9f408 Removing stale functions from legacy module mbsantiago 2025-04-25 17:12:39 +0100
• 899f74efd5 Wrote the main train function mbsantiago 2025-04-24 10:00:18 +0100
• 4b4c3ecdf5 Added loguru as a dependency mbsantiago 2025-04-24 00:20:58 +0100
• 13afac65a5 Added an example conf file mbsantiago 2025-04-24 00:20:46 +0100
• d8cf1db19f Fix augmentations mbsantiago 2025-04-24 00:20:38 +0100
• 8a6ed3dec7 Starting to add logging to preprocess mbsantiago 2025-04-24 00:20:30 +0100
• 7dd35d6e3e Refine training config mbsantiago 2025-04-23 23:35:42 +0100
• d51e3f8bbd Rollback to single configs module mbsantiago 2025-04-23 23:35:27 +0100
• f3999fbba2 Starting to create a dedicated configs module mbsantiago 2025-04-23 23:19:23 +0100
• 2a45859393 Run lint fix mbsantiago 2025-04-23 23:19:08 +0100
• 86d56d65f4 Added jupyter and marimo group dependencies mbsantiago 2025-04-23 23:15:40 +0100
• 27ba8de463 Updated soundevent mbsantiago 2025-04-23 23:15:29 +0100
• 59bd14bc79 Added clips for random cliping and augmentations mbsantiago 2025-04-23 23:15:08 +0100
• 2396815c13 Add a default target config mbsantiago 2025-04-23 23:14:39 +0100
• ac4bb8f023 Added min and max freq attributes to preprocessor protocol mbsantiago 2025-04-23 23:14:31 +0100
• 6498b6ca37 Added BlockGroups mbsantiago 2025-04-23 23:14:11 +0100
• bfcab0331e Attend test warnings mbsantiago 2025-04-22 09:17:17 +0100
• c276230bff Fix batdetect2 test mbsantiago 2025-04-22 09:08:29 +0100
• e38c446f59 Update gitignore mbsantiago 2025-04-22 09:06:12 +0100
• 24c4831745 Add example annotations mbsantiago 2025-04-22 09:06:06 +0100
• 9fc713d390 Temporary remove compat params module mbsantiago 2025-04-22 09:01:58 +0100
• 285c6a3347 Updating to new Augmentation object mbsantiago 2025-04-22 09:01:46 +0100
• 541be15c9e Update augmentation tests to new structure mbsantiago 2025-04-22 09:00:57 +0100
• 8a463e3942 Remove test migration mbsantiago 2025-04-22 09:00:44 +0100
• 257e1e01bf Fixing small errors in tests mbsantiago 2025-04-22 08:51:21 +0100
• ece1a2073d Fixed errors with extraction test mbsantiago 2025-04-22 08:50:56 +0100
• b82973ca1d Move array and tensor util test to corresponding folder mbsantiago 2025-04-22 08:50:43 +0100
• 7c89e82579 Fixing imports after restructuring mbsantiago 2025-04-22 00:36:34 +0100
• dcae411ccb Add pytest coverage to dev dependencies mbsantiago 2025-04-21 21:26:01 +0100
• ce15afc231 Restructured models module mbsantiago 2025-04-21 21:25:50 +0100
• 096d180ea3 Create an encoder module mbsantiago 2025-04-21 15:28:56 +0100
• ffa4c2e5e9 Remove unnecessary config and build modules mbsantiago 2025-04-21 15:28:47 +0100
• 6c744eaac5 Improved docstrings for blocks mbsantiago 2025-04-21 15:28:26 +0100
• e00674f628 Added better docstrings to types module mbsantiago 2025-04-21 14:06:16 +0100
• 907e05ea48 Minor changes to makefile mbsantiago 2025-04-21 13:21:52 +0100
• 3123d105fd Created a Makefile mbsantiago 2025-04-21 13:18:41 +0100
• 9b6b8a0bf9 Add postprocessing docs mbsantiago 2025-04-20 18:18:58 +0100
• 4aa2e6905c Remove old post_process module mbsantiago 2025-04-20 17:56:07 +0100
• 3abebc9c17 Added working postprocess decoding tests mbsantiago 2025-04-20 17:53:56 +0100
• 1f4454693e Working on postprocess tests mbsantiago 2025-04-20 15:52:25 +0100
• bcf339c40d Updated postprocess module with docstrings mbsantiago 2025-04-20 13:56:18 +0100
• 089328a4f0 Update targets docs mbsantiago 2025-04-19 20:35:34 +0100
• 6236e78414 Update TargetProtocol and related to include rois mbsantiago 2025-04-19 20:26:18 +0100