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conda-dependencies-fix

dev

feat/GH-7-filename-in-console-output

feat/add-chunk-size-to-cli

feat/loosen-dependencies

feat/migrate-to-numpy-2

feat/migrate-to-uv

fix/GH-10-merge-results-index-error

fix/GH-15-spectrogram-features-computation

fix/GH-30-torch-deprecation-warning-weights-only

fix/GH-31-negative-dimension-are-not-allowed

fix/GH-5-time-expansion-is-not-read

fix/handle-empty-files-gracefully

fix/update-dependencies

fix/update-python-version-support

issue-20

main

no_preprocessing

remove_xarray

test/add_audio_files_provided_by_padpadpadpad_to_test_suite

train

#11

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#21

#25

#32

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#4

#44

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#6

#61

#8

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• 0bb0caddea Update augmentations mbsantiago 2025-08-25 17:06:17 +0100
• 76dda0a0e9 Fix train preprocessing mbsantiago 2025-08-25 14:00:56 +0100
• c36ef3ecb5 Labels to torch mbsantiago 2025-08-25 12:43:34 +0100
• 667b18a54d Preprocessing in pytorch mbsantiago 2025-08-25 11:41:55 +0100
• 61115d562c Moved types to dedicated module mbsantiago 2025-08-24 10:55:48 +0100
• 02adc19070 Better structure for training module mbsantiago 2025-08-23 18:23:45 +0100
• d4f249366e Clean up the detector head mbsantiago 2025-08-18 16:07:51 +0100
• 98f83e8b34 Small fix mbsantiago 2025-08-18 10:25:14 +0100
• 9d1497b3f4 Handle case of empty preds or gt mbsantiago 2025-08-17 23:00:40 +0100
• 7af72912da Implement previous matching strategy (greedy) mbsantiago 2025-08-17 22:52:00 +0100
• 4aea3fb2b0 Copy librosa PCEN implementation mbsantiago 2025-08-17 18:02:40 +0100
• c1945ebdb7 Minor difference in loss fixed mbsantiago 2025-08-16 18:49:30 +0100
• 13da5d2814 Remove unnecessary extra conv layer mbsantiago 2025-08-16 18:32:35 +0100
• 78a0975864 Same issue mbsantiago 2025-08-14 11:07:27 +0100
• c9848deebf Fix logging issue mbsantiago 2025-08-14 11:05:21 +0100
• a7301bcdc8 Add image logging for mlflow mbsantiago 2025-08-14 10:50:00 +0100
• fdbb9c2b43 Go back to serial matching mbsantiago 2025-08-12 19:57:49 +0100
• 75e555ff00 Fix matching error after optimising mbsantiago 2025-08-12 19:49:24 +0100
• c7b110feeb Limit number of parallel processes to match predictions and annotations mbsantiago 2025-08-12 19:06:44 +0100
• 7d92ec772b Fix number formatting in gallery plot mbsantiago 2025-08-12 18:49:21 +0100
• 0bb703f3c1 Add call type alias mbsantiago 2025-08-12 18:45:54 +0100
• 81c7b68b0b Update dev deps mbsantiago 2025-08-12 18:45:43 +0100
• 59aaf07af5 Update tests after incorporating term registry from soundevent mbsantiago 2025-08-12 18:44:18 +0100
• 51d0a49da9 Improve performance of postprocessing code mbsantiago 2025-08-12 17:47:17 +0100
• b997a122f1 Enable batdetect2 in the cli mbsantiago 2025-08-11 12:25:04 +0100
• c41551b59c Use match config for training mbsantiago 2025-08-11 12:02:46 +0100
• 8aa2d0cd11 Add evaluation config with match strategy mbsantiago 2025-08-11 12:02:30 +0100
• 65d13a32b7 Also ignore assertion errors in gallery plotting mbsantiago 2025-08-11 09:46:36 +0100
• 31a0d1bbb5 Drop duplicate bin edges mbsantiago 2025-08-11 08:59:12 +0100
• f361420e58 Fix issue in gallery plotting mbsantiago 2025-08-11 08:54:37 +0100
• 2cc0bd59d4 Add plot limits mbsantiago 2025-08-11 01:37:22 +0100
• 2308ea83a3 Add example plotting notebook mbsantiago 2025-08-11 01:35:31 +0100
• 374c62d7ab Add dataset summary and split functions mbsantiago 2025-08-11 01:35:09 +0100
• ef279bee5d Update to soundevent 2.7 mbsantiago 2025-08-11 01:34:54 +0100
• 2341f822a7 Ignore plotting failures in gallery plot mbsantiago 2025-08-08 13:30:44 +0100
• c3d377b6e0 Update soundevent mbsantiago 2025-08-08 13:07:12 +0100
• d9395d3eeb Updated callback to include plotting mbsantiago 2025-08-08 13:06:28 +0100
• aaec66c15e Added BatDetect2Prediction wrapper and method mbsantiago 2025-08-08 13:06:10 +0100
• 6213238585 Added matching configs mbsantiago 2025-08-08 13:05:50 +0100
• a485ea4f79 Add get_default_preprocessor function mbsantiago 2025-08-08 13:03:53 +0100
• 3cfceb76b4 Added plotting example gallery function mbsantiago 2025-08-08 13:03:42 +0100
• d877d383a4 Disable logs by default mbsantiago 2025-08-08 12:25:57 +0100
• bb4a9fe645 Move legacy plot module to legacy folder mbsantiago 2025-08-08 12:25:49 +0100
• 87ce2acd6f Adding plotting functions mbsantiago 2025-08-08 12:25:26 +0100
• e1908c35ca Update compat module to use new term module mbsantiago 2025-08-08 12:25:16 +0100
• 62923a201b Move dataset example to config mbsantiago 2025-08-08 12:24:59 +0100
• d9323a1383 Move legacy evaluate code to legacy folder mbsantiago 2025-08-07 16:20:16 +0100
• 1ee9643a61 Update soundevent package to get match fixes mbsantiago 2025-08-06 21:39:42 +0100
• bf6f52a65d Add data/targets notebookes mbsantiago 2025-08-04 02:49:30 +0100
• 9816985bb1 Create dataloader config mbsantiago 2025-07-29 12:10:51 +0100
• 62f0c5c397 Remove stale tensorboard logger argument mbsantiago 2025-07-29 11:47:07 +0100
• 839a632aa2 Remove non-existing option in tensorboard logger mbsantiago 2025-07-29 00:17:46 +0100
• 829c07fb12 Remove unnecessary note mbsantiago 2025-07-29 00:03:20 +0100
• d031e00250
  Update README.md Santiago Martinez Balvanera 2025-07-21 07:32:26 -0600
• 2dd2c0156b Update gitignore mbsantiago 2025-06-28 15:52:56 -0600
• 6732394f50 Add model checkpoint callback mbsantiago 2025-06-28 15:46:50 -0600
• 8368aad178 Add better logging mbsantiago 2025-06-28 14:45:18 -0600
• 19e873dd0b Improve augmentations config and logging mbsantiago 2025-06-28 11:36:18 -0600
• ed67d8ceec Add mlruns to gitignore mbsantiago 2025-06-28 11:23:54 -0600
• bafb9a3622 Add mlflow logger mbsantiago 2025-06-28 11:08:19 -0600
• e8db1d4050 Fix hyperparameter saving mbsantiago 2025-06-26 19:53:19 -0600
• b396d4908a Fix trainer init mbsantiago 2025-06-26 19:40:27 -0600
• ce15a0f152 Fix trainer init mbsantiago 2025-06-26 19:35:23 -0600
• 16febed792 Add test that ensures example_config is valid mbsantiago 2025-06-26 19:21:46 -0600
• d67ae9be05 Update config to remove optimiser level mbsantiago 2025-06-26 18:42:53 -0600
• 15de168a20 Update build trainer mbsantiago 2025-06-26 17:43:56 -0600
• 0c8fae4a72 Instantiate lightnign module from config mbsantiago 2025-06-26 17:39:50 -0600
• 6d57f96c07 update gitignore mbsantiago 2025-06-26 16:19:33 -0600
• a0622aa9a4 Fix train issues mbsantiago 2025-06-26 16:16:29 -0600
• 587742b41e Change train to use full config mbsantiago 2025-06-26 16:02:41 -0600
• 6d91153a56 use just instead of make mbsantiago 2025-06-26 13:29:23 -0600
• 70c96b6844 Move configs to example_data folder mbsantiago 2025-06-26 13:29:13 -0600
• 22f7d46f46 Improve logging of train preprocessing mbsantiago 2025-06-26 13:08:44 -0600
• 1384c549f7 Create TrainPreprocessConfig mbsantiago 2025-06-26 12:30:16 -0600
• 4b6acd5e6e Add manual logging of hyperparams mbsantiago 2025-06-26 11:59:33 -0600
• 2ac968d65b Test with dvc live mbsantiago 2025-06-26 10:05:01 -0600
• 166dad20bd Rename BlockGroupConfig to LayerGroupConfig mbsantiago 2025-06-26 10:04:42 -0600
• cbb02cf69e Add dvclive as an optional group mbsantiago 2025-06-26 10:04:16 -0600
• 647468123e Update model config in example config mbsantiago 2025-06-26 10:04:00 -0600
• 363eb9fb2f Add example-train to makefile mbsantiago 2025-06-26 10:03:52 -0600
• b21c224985 Add example preprocess to make file mbsantiago 2025-06-26 07:55:40 -0600
• 152a577511 Add comprehensive conf file mbsantiago 2025-06-26 07:55:33 -0600
• 136949c4e7 Add logging config mbsantiago 2025-06-26 07:55:24 -0600
• a462beaeb8 Remove rogue print mbsantiago 2025-06-24 06:27:41 -0600
• daab8ff0d7 Fix validation is_in_subclip after encoder changes mbsantiago 2025-06-24 06:26:08 -0600
• 235f0e27da Add load dataset config function mbsantiago 2025-06-24 12:40:29 +0100
• b5b4229990 Fix testing issues mbsantiago 2025-06-23 19:08:55 +0100
• 8253b5bdc4 Update makefile mbsantiago 2025-06-23 18:53:15 +0100
• c7ea361cf4 Implement changes needed to make roi encode/decode class dependent mbsantiago 2025-06-23 18:52:36 +0100
• 3407e1b5f0 Add other roi tests mbsantiago 2025-06-21 23:51:07 +0100
• 0a0d6f7162 Use standard dependency-groups instead of tool.uv section mbsantiago 2025-06-21 23:01:54 +0100
• ad0f0bcb24 Add tests for peak energy function mbsantiago 2025-06-21 23:01:08 +0100
• 3103630c26 Update pyproject to use src layout mbsantiago 2025-06-21 13:49:06 +0100
• 960558be8b move to src layout mbsantiago 2025-06-21 13:48:40 +0100
• e352dc40bd Fixed Target object after changes to roi mbsantiago 2025-06-21 13:47:04 +0100
• c559bcc682 Changed ROIMapper protocol to only have encoder/decoder methods mbsantiago 2025-06-21 11:44:15 +0100
• ebad489cb1 Merge branch 'train' of github.com:macaodha/batdetect2 into train mbsantiago 2025-06-20 16:03:15 +0100
• 3c9e5aca2f Fix testing issues mbsantiago 2025-06-20 15:57:11 +0100
• a62f07ebdd to cpu Santiago Martinez Balvanera 2025-06-19 00:46:43 +0100
• 434fc652a2 Add collate fn Santiago Martinez Balvanera 2025-06-19 00:46:34 +0100