batdetect2

lionel/batdetect2

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conda-dependencies-fix

dev

feat/GH-7-filename-in-console-output

feat/add-chunk-size-to-cli

feat/loosen-dependencies

feat/migrate-to-numpy-2

feat/migrate-to-uv

fix/GH-10-merge-results-index-error

fix/GH-15-spectrogram-features-computation

fix/GH-30-torch-deprecation-warning-weights-only

fix/GH-31-negative-dimension-are-not-allowed

fix/GH-5-time-expansion-is-not-read

fix/handle-empty-files-gracefully

fix/update-dependencies

fix/update-python-version-support

issue-20

main

no_preprocessing

remove_xarray

test/add_audio_files_provided_by_padpadpadpad_to_test_suite

train

train-refactor

#11

#12

#16

#2

#21

#25

#32

#33

#34

#35

#36

#37

#38

#39

#4

#44

#45

#52

#6

#61

#65

#8

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v1.0.8

v1.1.0

v1.1.1

v1.2.0

v1.3.0

v1.3.1

v2.0.0b1

b71cb8c755 fix: CLI now reads time_expansion_factor correctly Santiago Martinez 2023-05-01 15:04:29 +0100
54d83219f1 Bump version: 1.0.1 → 1.0.2 v1.0.2 Santiago Martinez 2023-04-29 15:43:53 +0100
28dc435351 fix: added bump2version config to gitignore Santiago Martinez 2023-04-29 15:43:39 +0100
715db9a110 fix: move spectrogram to cpu when plotting Santiago Martinez 2023-04-29 15:39:45 +0100
616a24347d fix: Updated torch version to avoid security issue Santiago Martinez 2023-04-29 15:33:40 +0100
57f2b50239 fix: move tensors to cpu when converting to numpy Santiago Martinez 2023-04-29 15:30:25 +0100
68d3842931 v1.0.1 v1.0.1 Santiago Martinez 2023-04-13 08:29:22 -0600
f4e0c6013e Fix: In pyproject.toml, project scripts reference to bat_detect updated. Santiago Martinez 2023-04-13 08:23:29 -0600
b252f23093 WIP Santiago Martinez 2023-04-13 07:58:01 -0600
1417fce44f

Create python-publish.yml v1.0 Santiago Martinez Balvanera 2023-04-13 07:55:51 -0600
c865b53c17 fixed missing get_default_db_config function Santiago Martinez 2023-04-07 16:26:01 -0600
178fa518c3 update gitignore to include models Santiago Martinez 2023-04-07 15:50:44 -0600
e8fd4e2931 version 1.0 Santiago Martinez 2023-04-07 15:47:16 -0600
c2c9652a04 Finetune gradio app Santiago Martinez 2023-04-07 15:46:28 -0600
0f97d51086 freq axis ticks Santiago Martinez 2023-04-07 15:46:18 -0600
85092e846b Better frequency axis tick values Santiago Martinez 2023-04-07 15:46:04 -0600
0a7ad18193 Updated gradio app to new api Santiago Martinez 2023-04-07 15:20:27 -0600
b8bbfe8ad4 updated extract spec slices bit Santiago Martinez 2023-04-07 15:20:15 -0600
5e08607eec Updated notebook Santiago Martinez 2023-04-07 14:46:54 -0600
638b5c578e Added plot module Santiago Martinez 2023-04-07 14:46:48 -0600
0a22f1798e Checked that returned features is a 2d numpy array Santiago Martinez 2023-04-07 14:46:38 -0600
29074c689e Add warning to finetuning modules Santiago Martinez 2023-04-07 11:27:09 -0600
9e79849d6f Changed bat_detect to batdetect2 Santiago Martinez 2023-04-07 11:24:22 -0600
7c80441d60

Merge pull request #4 from macaodha/dev Oisin Mac Aodha 2023-04-07 15:06:10 +0100
80792f22d1

Create python-package.yml Santiago Martinez Balvanera 2023-03-30 12:04:05 -0600
b94a7760d3 Merge branch 'main' into dev dev Santiago Martinez 2023-03-30 12:01:56 -0600
22a2c70661 Minor README formatting Santiago Martinez 2023-03-30 11:58:14 -0600
148611bac0 Minor README formatting Santiago Martinez 2023-03-30 11:55:41 -0600
2d8d175f3f Updated README with new installation instructions and API Santiago Martinez 2023-03-30 11:52:42 -0600
b0c3dbe403 Added documentation to the API module Santiago Martinez 2023-03-30 11:24:13 -0600
cb650c265b Pyright config Santiago Martinez 2023-03-30 11:24:05 -0600
5b73b65b1a Added pytest to dev dependencies Santiago Martinez 2023-03-30 10:44:52 -0600
3c6600afcb fixed librosa core.spectrum import Santiago Martinez 2023-03-20 11:22:29 +0000
ad1c345751 updated run_batdetect script Santiago Martinez 2023-03-20 11:14:14 +0000
0aa3d9d1e0 added model file Santiago Martinez 2023-03-20 11:11:05 +0000
74e8283576 update run_batdetect command Santiago Martinez 2023-03-20 11:09:41 +0000
a4f99dd26a Merge branch 'main' into dev Santiago Martinez 2023-02-27 09:50:37 +0000
ed21b47f61 update packaging file with new CLI Santiago Martinez 2023-02-26 21:10:44 +0000
e900ddc86d git ignore all notebook related files except batdetect2_notebook Santiago Martinez 2023-02-26 21:10:35 +0000
acf01f4970 Added postprocess function to API Santiago Martinez 2023-02-26 20:48:52 +0000
b0d9576a24 Changed public API to use trained model by default Santiago Martinez 2023-02-26 19:17:47 +0000
a2deab9f3f Added click to dependencies and made cli tests Santiago Martinez 2023-02-26 18:40:35 +0000
6f2bb605d3 Moved types to a single module Santiago Martinez 2023-02-26 14:27:03 +0000
f0b0f28379 Changed the model API so that they always return the features Santiago Martinez 2023-02-25 20:10:44 +0000
0eecf54a94 Added an API file with tests to check basic functionality Santiago Martinez 2023-02-25 19:40:54 +0000
e14da23004

Merge pull request #2 from macaodha/conda-dependencies-fix Oisin Mac Aodha 2023-02-23 12:14:47 +0000
40222d8233 Fixed errors with command Santiago Martinez 2023-02-22 23:20:51 +0000
e6a6ad4696 Finished refactoring detector_utils Santiago Martinez 2023-02-22 22:45:26 +0000
8da98b5258 Refactored detector_utils module Santiago Martinez 2023-02-22 20:24:43 +0000
7550c6faf1 updated .git-blame-ignore-revs file Santiago Martinez 2023-02-22 15:06:40 +0000
53100f51e0 formatted with black and isort Santiago Martinez 2023-02-22 15:06:02 +0000
eaecf7ba45 change black line-length settings to 80 Santiago Martinez 2023-02-22 15:01:13 +0000
ca2a9c39a0 adding typing and documentation to load_device function Santiago Martinez 2023-02-22 15:00:38 +0000
d7ddf72c73 Made explicit imports in detector/models.py Santiago Martinez 2023-02-22 14:55:08 +0000
251d87c690 Added __init__.py files to evaluate and finetune modules Santiago Martinez 2023-02-22 14:49:48 +0000
894993dbd5 updated gitignore Santiago Martinez 2023-02-22 14:43:18 +0000
8f7020f72c updated README conda installation instructions conda-dependencies-fix Santiago Martinez 2023-02-21 09:22:50 +0000
0320d4c57f added a conda environment file to ease conda installation Santiago Martinez 2023-02-21 09:20:57 +0000
c520c469d9 moved model directory into bat_detect module Santiago Martinez 2023-02-02 19:24:29 +0000
fda330e8fd update blame ignore rev file Santiago Martinez 2023-02-02 19:13:39 +0000
9cb6b20949 formatted with black and isort Santiago Martinez 2023-02-02 19:13:00 +0000
bf8230b2f7 updated gitignore Santiago Martinez 2023-02-02 19:10:19 +0000
9fd3412d5b Added command module Santiago Martinez 2023-02-02 19:06:24 +0000
7050f858aa Merge branch 'main' into dev Santiago Martinez 2023-02-01 13:02:57 +0000
24cea6d76e added pyproject file Santiago Martinez 2023-02-01 12:54:03 +0000
7f2580bb93

Update LICENSE.md Oisin Mac Aodha 2023-02-01 11:57:45 +0000
4d6bf5e9e3 Added formatting commit to ignoreRevs file Santiago Martinez 2023-01-25 19:19:28 +0000
3c17a23371 Formatted code with Black and isort Santiago Martinez 2023-01-25 19:17:38 +0000
2dc385a700 update readme Oisin Mac Aodha 2022-12-20 17:08:27 +0000
441e2b6cce rename outputs in app Oisin Mac Aodha 2022-12-20 16:53:57 +0000
9959356750 limiting file length in demos Oisin Mac Aodha 2022-12-20 16:25:43 +0000
7b158d6e8d small clean up of app Oisin Mac Aodha 2022-12-19 22:47:35 +0000
20b710118b added gradio app Oisin Mac Aodha 2022-12-19 22:43:04 +0000
0d6eb7a248

added biorxiv url Oisin Mac Aodha 2022-12-17 07:46:05 +0000
32afcdbd5d

Added TODOs Oisin Mac Aodha 2022-12-14 23:10:05 +0000
b4ab59511e tweaks macaodha 2022-12-14 19:08:05 +0000
a5c263093f clean up instructions macaodha 2022-12-14 18:55:54 +0000
7b5b2be08f added viz scripts macaodha 2022-12-14 18:19:52 +0000
20218e023c Minor fixes to readme and updated requirements. macaodha 2022-12-13 17:56:45 +0000
895c93c022 updated notebook macaodha 2022-12-09 19:55:11 +0000
0dba8a6784 added audio macaodha 2022-12-09 19:28:54 +0000
011c878e58 path changes macaodha 2022-12-09 19:16:35 +0000
0945c1caeb added code macaodha 2022-12-09 19:03:24 +0000
6f5b60404a first commit macaodha 2022-12-08 11:54:42 +0000